Rifaximin Drug Interaction Checker
Check Your Medications for Rifaximin Interactions
Enter medications you're currently taking to see if they interact with rifaximin. Note: This tool is for informational purposes only and should not replace professional medical advice.
Selected Medications:
Interaction Results
Select medications to see interaction results
When you’re prescribed rifaximin is a gut‑specific antibiotic that stays mostly in the intestines, limiting systemic exposure. Because it works locally, many assume it can’t clash with other medicines - that’s a dangerous myth. This guide breaks down every major interaction, the situations where you must not use the drug, and practical steps to keep you safe.
What Is Rifaximin?
Rifaximin is a semi‑synthetic, broad‑spectrum antibiotic belonging to the rifamycin class. It targets bacterial RNA polymerase, halting protein synthesis. Unlike most antibiotics, it has poor oral bio‑availability (less than 0.5% absorbed), which means it works mainly inside the gut lumen.
Approved Indications
- Traveler’s diarrhea caused by non‑invasive Escherichia coli
- Irritable bowel syndrome with diarrhea (IBS‑D)
- Hepatic encephalopathy in patients with liver cirrhosis (hepatic encephalopathy)
How Rifaximin Is Processed in the Body
Because it stays in the gastrointestinal tract, rifaximin undergoes minimal metabolism. The drug is excreted unchanged in feces, and the tiny fraction that enters the bloodstream is eliminated by the liver via Cytochrome P450 enzymes, primarily CYP3A4. This limited systemic exposure is why many clinicians think drug‑drug interactions are rare - but the few that do occur can be clinically significant.

Major Drug Interactions
Below are the most commonly reported interactions. They fall into three categories: pharmacokinetic (affect absorption or metabolism), pharmacodynamic (additive or opposing effects), and formulation‑related (alter gut pH or motility).
Interacting Drug | Interaction Type | Clinical Significance | Management |
---|---|---|---|
Ciprofloxacin | Pharmacodynamic | Reduced efficacy of rifaximin (antagonism) | Separate dosing by at least 2 hours or choose alternative antibiotic. |
Metronidazole | Pharmacodynamic | Potential additive GI upset | Monitor for diarrhea; consider dose reduction if symptoms severe. |
Warfarin | Pharmacokinetic | Increased INR due to altered gut flora affecting vitamin K production | Check INR more frequently during rifaximin therapy; adjust warfarin dose if needed. |
Oral contraceptives | Pharmacokinetic | Reduced enterohepatic recycling of estrogen → lower contraceptive efficacy | Advise backup contraception (condoms) while on rifaximin. |
Antacids (Aluminum/Magnesium) | Formulation‑related | May bind rifaximin and lower luminal concentration | Take rifaximin at least 1 hour before or 2 hours after antacids. |
Probiotics | Pharmacodynamic | Generally safe; may reduce diarrhea risk | No dose adjustment needed, but start probiotics after rifaximin course ends. |
Contraindications: When Not to Use Rifaximin
Rifaximin is contraindicated in the following situations:
- Known hypersensitivity to rifaximin, other rifamycins, or any component of the formulation.
- Severe liver impairment (Child‑Pugh class C). The drug’s minimal absorption can become clinically relevant when hepatic clearance drops dramatically.
- Pregnancy and lactation: animal studies show fetal toxicity at high doses; human data are insufficient.
- Active intestinal obstruction or paralytic ileus - the drug cannot reach its target site.

Special Populations
Renal Impairment - Although rifaximin is not renally excreted, patients with end‑stage renal disease often take multiple concomitant meds (e.g., phosphate binders) that may interact. Monitoring for GI symptoms is advisable.
Children - Safety and efficacy have only been established for ages ≥12 years for IBS‑D. Dosing in younger children is off‑label and requires pediatric specialist oversight.
Elderly - Age‑related changes in gut motility and polypharmacy increase interaction risk. Review all current medicines before starting rifaximin.
Practical Tips to Avoid Problems
- Compile a complete medication list, including OTC products, supplements, and herbal remedies.
- Ask the pharmacist whether the new prescription could affect hormone‑based birth control.
- If you’re on warfarin, schedule an INR check within one week of starting rifaximin.
- Take rifaximin on an empty stomach unless the label advises otherwise; this maximises luminal exposure.
- Avoid antacids within two hours of the dose, and inform your doctor if you use magnesium‑based laxatives.
- Consider a short probiotic course (e.g., Lactobacillus rhamnosus GG) after finishing rifaximin to restore a healthy microbiome.
Frequently Asked Questions
Can I take rifaximin with my birth control pill?
Rifaximin can lower the enterohepatic recycling of estrogen, reducing pill effectiveness. Use a backup method (condoms or a second barrier) for the duration of treatment and for a few days after the last dose.
My doctor prescribed ciprofloxacin for a urinary infection. Can I still start rifaximin for IBS‑D?
Ciprofloxacin and rifaximin have antagonistic actions in the gut, which can blunt the benefit of rifaximin. If possible, finish ciprofloxacin first, wait 48 hours, then start rifaximin. Discuss alternative antibiotics with your clinician.
Will rifaximin affect my gut bacteria permanently?
Rifaximin’s effect is mostly localized and short‑term. Most bacterial populations rebound within weeks after a typical 14‑day course. Adding a probiotic can speed recovery.
Is it safe to take rifaximin while on warfarin?
Yes, but monitor your INR more closely. Rifaximin can change gut flora that produce vitamin K, causing INR spikes. Adjust warfarin dose only under medical supervision.
Can I drink alcohol while on rifaximin?
Alcohol does not directly interact with rifaximin, but heavy drinking worsens liver disease and can increase the risk of hepatic encephalopathy, the very condition rifaximin is used to treat.
What should I do if I miss a dose?
Take the missed dose as soon as you remember, unless it’s less than 12 hours until the next scheduled dose. In that case, skip the missed pill and continue with your regular schedule. Do not double‑dose.
Understanding rifaximin’s interaction profile empowers you to avoid surprises, stay on track with treatment, and keep other medications working as intended. Keep this guide handy whenever a new prescription lands on your pill organizer.
Grace Hada
October 18, 2025 AT 19:26Rifaximin’s myth of safety is a reckless gamble for anyone who discounts drug interactions.